There's a new standalone and plugin (VST) editor for Korg minilogue on the block. This has been made by Julien Eres and is in BETA. However, you need to register to the minilogueEdit group to be able to access the beta test and get further details on setting up this debug version.
Unfortunately Mac users, myself included, will have to wait until a Mac VST version is available.
UPDATE: The Mac OS version has just been announced too (15th February 2017)! So, you should be able to edit your Minilogue from your Mac and Windows PC now.
We're waiting on approval into the BETA program. In the meantime, here's some info we've picked up:
You can support this project (and remove the annoying startup popup) by making a donation.
Learn Korg Minilogue beginner and advaned power tips and tricks in these two excellent video courses.