Not sure why but my es2 is not being recognized for automation and every other synth is? Did I screw up a setting in Logic? When I open the automation quick access and it's in learn mode and I click on a parameter on the es2 it's not being recognized.

It recognizes the Midi Mono Mode Parameter on the es2 but when I click say the cut off filter it doesn't recognize it in the Automation Quick Access window

It is happening only in one project or in all your projects? try opening a new project, add an instance of the ES2, and then see if you can access it in the new project. Let us know what the result is to troubleshoot further