Thanks for your response R,
unfortunately, I'm still having issues.
I have just upgraded to Logic Pro X 10.0.6. I have OS X 10.9.1
when I bounce the track the pops are still in the rendered file.
I feel the old crossfade tool from Logic 9 would fix this quickly and easily.
when I select the pointer tool and hold down shift-control and drag, all it does is move the region.
I tried selecting the fade tool and that does the same thing.
In the inspector, the only fade in/out values are speed up and slow down.
It appears there might be a bug in my software, but I can't figure it out. I never had a problem with crossfade before. I used to use it all the time.
All the other tools are working fine. (BTW I froze my midi tracks in case it was a CPU issue, but that did not help either).
Any suggestions would be greatly appreciated. I haven't seen this issue addressed in any tutorials on MPV or YouTube or my Google searches.